SNP Profiles of IMC 67/S.DALVA View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AA	AA	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	CC
1._GC-05-82-2-33	AC	AA	AA	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	CC
2._RUQ_1056	AC	AA	AA	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	CC
3._IMC_67_Fld#_152A_Plt#_1	AC	AA	AA	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	CC
4._IMC_67_Fld#_152B_Plt#_4	AA	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AG	AG	AA
5._RUQ_1056	_	_	_	_	_	_	GG	_	_	_	_	_	_	_
6._GC-05-82-2-33	AC	AA	AA	AC	TT	CC	GG	GG	AA	_	GG	TT	CT	GG
7._GC-05-082-2-33	AC	AA	AA	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GG
8._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
9._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
10._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
11._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
12._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
13._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
14._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
15._GC-05-82-2-33	AC	AA	_	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GG
16._GC-05-82-2-33	AC	AA	AA	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GG
17._GC-05-82-2-33	AC	AA	AA	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GG
18._RUQ_1056	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
19._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
20._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
21._IMC_67	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
22._RUQ_1056	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
23._IMC67	_	_	_	_	_	CC	_	_	_	_	GG	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AA	AA	CC	GG	AG	GG	CC	AA	CC	AG	AC	AG
1._GC-05-82-2-33	AA	AC	AA	AA	CC	GG	AG	GG	CC	AA	CC	AG	AC	AG
2._RUQ_1056	AA	AC	AA	AA	CC	GG	AG	GG	CC	AA	CC	AG	AC	AG
3._IMC_67_Fld#_152A_Plt#_1	AA	AC	AA	AA	CC	GG	AG	GG	CC	AA	CC	AG	AC	AG
4._IMC_67_Fld#_152B_Plt#_4	AG	AA	AA	GG	CC	GG	AG	GG	AC	AG	GG	AA	CC	AA
5._RUQ_1056	_	GT	_	_	_	_	_	_	CC	_	GG	_	_	_
6._GC-05-82-2-33	TT	GT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	GT	CT
7._GC-05-082-2-33	TT	GT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	GT	CT
8._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
9._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
10._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
11._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
12._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
13._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
14._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
15._GC-05-82-2-33	TT	GT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	GT	CT
16._GC-05-82-2-33	TT	GT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	GT	CT
17._GC-05-82-2-33	TT	GT	TT	TT	CC	GG	CT	CC	CC	TT	GG	AG	GT	CT
18._RUQ_1056	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
19._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
20._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
21._IMC_67	_	GT	TT	_	CC	_	CT	_	CC	TT	GG	AG	GT	CT
22._RUQ_1056	_	GT	_	TT	_	_	_	CC	CC	TT	GG	AG	GT	CT
23._IMC67	_	_	_	_	_	_	_	CC	AA	_	CG	_	_	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	AC	CG	AG	GG	AG	GG	CC	TT	TT	AA	GG
1._GC-05-82-2-33	GG	AA	GG	AC	CG	AG	GG	AG	GG	CC	TT	TT	AA	GG
2._RUQ_1056	GG	AA	GG	AC	CG	AG	GG	AG	GG	CC	TT	TT	AA	GG
3._IMC_67_Fld#_152A_Plt#_1	GG	AA	GG	AC	CG	AG	GG	AG	GG	CC	TT	TT	AA	GG
4._IMC_67_Fld#_152B_Plt#_4	GG	AA	GG	CC	GG	GG	GG	AG	CG	CC	AA	AA	AG	GG
5._RUQ_1056	_	_	_	_	_	AG	_	_	_	_	_	_	AA	_
6._GC-05-82-2-33	CC	_	GG	AC	CG	AG	_	CT	GG	GG	AA	TT	AA	GG
7._GC-05-082-2-33	CC	TT	GG	AC	CG	AG	GG	CT	GG	GG	AA	TT	AA	GG
8._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
9._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
10._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
11._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
12._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
13._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
14._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
15._GC-05-82-2-33	CC	_	GG	AC	CG	AG	_	CT	GG	GG	AA	TT	AA	GG
16._GC-05-82-2-33	CC	_	GG	AC	CG	AG	_	CT	GG	GG	AA	TT	AA	GG
17._GC-05-82-2-33	CC	_	GG	AC	CG	AG	_	CT	GG	GG	AA	TT	AA	GG
18._RUQ_1056	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
19._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
20._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
21._IMC_67	CC	_	_	AC	CG	AG	_	CT	GG	_	_	TT	_	_
22._RUQ_1056	_	_	GG	AC	CG	AG	_	CT	_	_	_	_	AA	GG
23._IMC67	_	_	GG	AC	GG	AA	_	_	_	_	_	_	_	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	GG	GG	GG	AT	GG	GG	AA	AC	AG	AC	GG	CG
1._GC-05-82-2-33	AA	AG	GG	GG	GG	AT	GG	GG	AA	AC	AG	AC	GG	CG
2._RUQ_1056	AA	AG	GG	GG	GG	AT	GG	GG	AA	AC	AG	AC	GG	CG
3._IMC_67_Fld#_152A_Plt#_1	AA	AG	GG	GG	GG	AT	GG	GG	AA	AC	AG	AC	GG	CG
4._IMC_67_Fld#_152B_Plt#_4	AA	GG	GG	GG	GG	AT	CC	AG	AC	CC	AG	CC	GG	GG
5._RUQ_1056	_	_	_	_	_	_	_	_	_	AC	_	_	_	GG
6._GC-05-82-2-33	AA	CT	GG	GG	GG	AT	CC	CC	AA	AC	AG	GT	GG	GG
7._GC-05-082-2-33	AA	CT	GG	GG	GG	AT	CC	_	AA	AC	AG	GT	GG	GG
8._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
9._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
10._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
11._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
12._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
13._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
14._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
15._GC-05-82-2-33	AA	CT	GG	GG	GG	AT	CC	CC	AA	AC	AG	GT	GG	GG
16._GC-05-82-2-33	_	CT	GG	GG	GG	AT	CC	CC	AA	AC	AG	GT	GG	GG
17._GC-05-82-2-33	_	CT	GG	_	GG	AT	CC	CC	AA	AC	AG	GT	GG	GG
18._RUQ_1056	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
19._IMC_67	AA	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
20._IMC_67	_	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
21._IMC_67	_	_	_	_	GG	_	_	_	_	AC	_	GT	_	GG
22._RUQ_1056	AA	_	_	_	_	_	CC	_	_	AC	_	GT	_	CG
23._IMC67	AT	CT	_	_	_	_	CC	_	_	_	_	_	_	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	GG	GG	GG	AA	AA	CC	GG	AA	AA	AC	AA	CC	CG
1._GC-05-82-2-33	AC	GG	GG	GG	AA	AA	CC	GG	AA	AA	AC	AA	CC	CG
2._RUQ_1056	AC	GG	GG	GG	AA	AA	CC	GG	AA	AA	AC	AA	CC	CG
3._IMC_67_Fld#_152A_Plt#_1	AC	GG	GG	GG	AA	AA	CC	GG	AA	AA	AC	AA	CC	CG
4._IMC_67_Fld#_152B_Plt#_4	AC	GG	GG	AA	AA	AG	CC	AA	AA	AA	AC	AA	CC	GG
5._RUQ_1056	AC	_	CC	_	_	_	GG	GG	_	_	_	_	CC	TT
6._GC-05-82-2-33	AC	CC	CC	CC	AA	AA	GG	GG	TT	TT	GT	TT	CC	CG
7._GC-05-082-2-33	AC	CC	CC	CC	AA	AA	GG	GG	TT	TT	GT	TT	CC	CG
8._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
9._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
10._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
11._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
12._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
13._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
14._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
15._GC-05-82-2-33	AC	CC	CC	CC	AA	AA	GG	GG	TT	TT	GT	TT	CC	CG
16._GC-05-82-2-33	AC	CC	CC	CC	AA	AA	GG	GG	TT	TT	GT	TT	CC	CG
17._GC-05-82-2-33	AC	CC	CC	CC	AA	AA	GG	GG	TT	TT	GT	TT	CC	CG
18._RUQ_1056	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
19._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
20._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
21._IMC_67	AC	_	_	CC	_	_	GG	_	_	_	_	_	_	_
22._RUQ_1056	AC	_	CC	CC	_	_	GG	GG	TT	_	_	TT	CC	_
23._IMC67	AC	_	CC	_	_	_	_	_	_	GT	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	GG	AG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X
1._GC-05-82-2-33	GG	GG	AG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X
2._RUQ_1056	GG	GG	AG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X
3._IMC_67_Fld#_152A_Plt#_1	GG	GG	AG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X
4._IMC_67_Fld#_152B_Plt#_4	AG	GG	AG	GG	GG	AC	AA	CG	AG	AT	AG	AA	X_X	X_X
5._RUQ_1056	_	CC	_	_	GG	_	_	_	_	_	_	AA	X_X	X_X
6._GC-05-82-2-33	_	CC	CT	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X
7._GC-05-082-2-33	_	CC	CT	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X
8._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
9._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
10._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
11._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
12._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
13._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
14._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
15._GC-05-82-2-33	_	CC	CT	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X
16._GC-05-82-2-33	_	CC	CT	CC	_	CC	CC	GG	CC	AA	TT	AA	X_X	X_X
17._GC-05-82-2-33	_	CC	CT	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X
18._RUQ_1056	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AG	X_X	X_X
19._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AG	X_X	X_X
20._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
21._IMC_67	_	CC	CT	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X
22._RUQ_1056	_	CC	TT	_	-	CC	_	_	_	_	_	AA	X_X	X_X
23._IMC67	GG	CG	CC	_	_	_	_	_	_	_	CC	_	X_X	X_X

Input profile: IMC_67 GC-05-82-2-33

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

1._IMC_67 GC-05-82-2-33

identical
82 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1

Notes: MCCS_Structure_refs_above_0.9membership

2._IMC_67 RUQ_1056

identical
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

3._IMC_67 IMC_67_Fld#_152A_Plt#_1

identical
82 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 152A, Tree: 1

4._IMC_67 IMC_67_Fld#_152B_Plt#_4

68.9 %
82 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 152B, Tree: 4

5._IMC_67 RUQ_1056

61.8 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._IMC_67 GC-05-82-2-33

50.6 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL2

Notes: PL2 FP2

7._IMC_67 GC-05-082-2-33

50.6 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

8._IMC_67

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5233 2 > FP

Dapeng Zhang, 2016

9._IMC_67

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5233 5 > FP

Dapeng Zhang, 2016

10._IMC_67

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5233 4 > FP

Dapeng Zhang, 2016

11._IMC_67

50 %
35 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

12._IMC_67

50 %
35 shared markers

View View all Clone Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

13._IMC_67

50 %
35 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P55

Dapeng Zhang, 2016

14._IMC_67

50 %
35 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1/Rep 19 C0176

Dapeng Zhang, 2016

15._IMC_67 GC-05-82-2-33

49.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL4

Notes: PL4 FP3

16._IMC_67 GC-05-82-2-33

48.7 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL3

Notes: PL3 FP5

17._IMC_67 GC-05-82-2-33

48.7 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 33, Tree: PL1

Notes: PL1 FP1

18._IMC_67 RUQ_1056

48.6 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

19._IMC_67

48.6 %
35 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 647

Dapeng Zhang, 2016

20._IMC_67

48.5 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5233 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

21._IMC_67

48.5 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5233 3 > FP

Dapeng Zhang, 2016

22._IMC_67 RUQ_1056

47.2 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

23._IMC_67 IMC67

40.9 %
22 shared markers

View View all Clone Any

Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998